Due to the release of Ocarina of Time 3D, I am posting a barebones checklist I have created to assist you in completing a 100% playthrough. It basically lists every item, upgrade, gold skulltula, heartpiece, magic bean, bottle, mask etc... in order. I have used this checklist once before and I believe I have this list fairly down pat as far as the order. You may think it's skipping around a bit, but if you follow the order you will beat the game with everything.
Ocarina Of Time Checklist